Typing tool
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Typing tool
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Complete norovirus genomes
| DQ379713 | GII.3 | |
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| GII.P13 |
ORF1: 1..1177
ORF2: 1158..2804
ORF3: 2804..3568
LOCUS DQ379713 3620 bp RNA linear VRL 28-MAY-2007
DEFINITION Norovirus Hu/GII/Goulburn Valley G5175 A/1983/AUS nonstructural
polyprotein (ORF1) gene, partial cds; and capsid (ORF2) and basic
protein (ORF3) genes, complete cds.
ACCESSION DQ379713
VERSION DQ379713.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Goulburn Valley G5175 A/1983/AUS
ORGANISM Norovirus Hu/GII/Goulburn Valley G5175 A/1983/AUS
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3620)
AUTHORS Symes,S.J., Gunesekere,I.C., Marshall,J.A. and Wright,P.J.
TITLE Norovirus mixed infection in an oyster-associated outbreak: an
opportunity for recombination
JOURNAL Arch. Virol. 152 (6), 1075-1086 (2007)
PUBMED 17334907
REFERENCE 2 (bases 1 to 3620)
AUTHORS Symes,S.J., Gunesekere,I.C., Marshall,J.A. and Wright,P.J.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2006) School of Veterinary Science, University of
Melbourne, Parkville, VIC 3010, Australia
FEATURES Location/Qualifiers
source 1..3620
/organism="Norovirus Hu/GII/Goulburn Valley G5175
A/1983/AUS"
/mol_type="genomic RNA"
/strain="Hu/GII/Goulburn Valley G5175 A/1983/AUS"
/db_xref="taxon:371735"
/country="Australia"
gene <1..1177
/gene="ORF1"
CDS <1..1177
/gene="ORF1"
/note="3D-like RNA polymerase"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="ABD36490.1"
/translation="GHPHHVRKNEFWNGESFTGKLADQASKANLMFEEGKHMTPVYTA
ALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKAHCITLPIRVGMNM
NEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVRFSAEPQLAQIVAEDL
LSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSV
YSFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTV
TRDPAGWFGKLDQSSILRQLYWTRGPNHEDPNETMIPHAQRPVQLMALLGESSLHGPS
FYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 1158..2804
/gene="ORF2"
CDS 1158..2804
/gene="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ABD36491.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFAPKLGSLEISTESSDFDSNQP
TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2804..3568
/gene="ORF3"
CDS 2804..3568
/gene="ORF3"
/codon_start=1
/product="basic protein"
/protein_id="ABD36492.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGASAINQKVDFENNKYLQNA
SFVHDKEMLNAQIEATKRLQTDMIAIKQGVLTAGGFSPTDAARGAISAPMTKVLDWSG
TRYWAPNATSTTSMSGGFTSQTVHRTTPNFKTNQAPKPAPSSGSSVRSNSTQPTSLSS
HSSGSSRSSGSTAVSSLSSSNRTRDWVNQQNFDLEPYMPGSLRTAFVTPPSSTASSSG
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 3569..3620
ORIGIN
1 cggacacccg caccatgtcc gcaagaatga attctggaat ggcgagtctt ttacaggaaa
61 actggcagac caggcatcaa aagcaaatct catgttcgag gaaggcaaac acatgacacc
121 agtctacaca gcagcactca aagatgaatt ggtgaaaact gataagattt atggcaagat
181 caagaagagg cttctatggg gctctgacct ctccaccatg ataaggtgtg ctagggcttt
241 tggtggactc atggatgaat ttaaggcaca ctgtatcact cttccaatca gggtaggtat
301 gaacatgaat gaagatgggc ccataatctt cgagaaacac tctaggtaca gataccatta
361 tgatgcagac tactctcgtt gggattccac gcaacagaga gcagtgctag cagcagcact
421 tgagattatg gtgaggtttt ctgctgaacc acaattggca caaatagtgg ctgaggactt
481 gctttcaccg agtgtagttg atgtgggtga cttcaaaatc gcaatcaatg aaggcctacc
541 ttcaggagta ccatgtacat cacaatggaa ctccatcgcc cactggctac ttaccctgtg
601 cgctctgtct gaagtgacgg ggttgggtcc tgacatcata caagccaatt ctgtttactc
661 cttctatggc gatgatgaga ttgtaagcac agatataaaa ttagacccag agaaattgac
721 tacaaagctc aaggagtatg gtctcaaacc tacgcgccct gacaaaaccg aagggccgct
781 tgtgatcagt gaagacttga acggtctgac attccttcgt cggacagtca cccgtgaccc
841 agcaggatgg tttggaaagt tagaccaaag ttccatcctc agacaactgt actggactag
901 aggacccaat catgaagatc ctaatgaaac tatgatacca catgcacaaa ggccagtgca
961 actcatggca ctgttgggtg aatcatccct gcatggcccc tctttttaca gtaaagtcag
1021 taaattggtt atatctgaac tcaaagaagg aggaatggat ttttacgtgc ccaggcagga
1081 gtcaatgttc aggtggatga gattctcaga tctgagcacg tgggagggcg atcgcaatct
1141 ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc tgctccatct aacgatggtg
1201 ccgccggcct cgtcccagag atcaacaatg aggcaatggc gctagagcca gtggcaggtg
1261 cagcaatagc agcacctctc actggccagc aaaatataat tgatccctgg attatgaata
1321 attttgtgca agcacctggt ggtgagttta cagtgtcgcc taggaactcc cctggtgaag
1381 tacttctcaa tttagaatta ggtccagaaa taaaccctta tttggcccac cttgctagga
1441 tgtacaatgg ttatgcaggt gggtttgagg tgcaggtagt cctggctgga aatgcgttta
1501 cagcaggaaa ggtgatcttt gcagctatac cccctaattt tccaattgat aatctgagcg
1561 cagcacagat tacaatgtgc ccgcatgtga ttgtggatgt cagacagttg gaaccaatca
1621 accttccgat gcctgatgtc cgtaataact tctttcatta taatcaaggg tctgattcta
1681 ggttgcgctt aattgcaatg ctgtatacac ctcttagggc aaataattca ggggatgatg
1741 ttttcactgt gtcttgtagg gtgttaacta ggcctagccc tgatttctca tttaattttc
1801 tcgtcccgcc tactgtagaa tcaaagacaa agcccttcac cctccccatc ttgactattt
1861 ctgaaatgtc taattctagg tttccagtac caattgactc tctgcacacc agcccgactg
1921 agaacattgt tgtccagtgc caaaatgggc gagtcaccct tgacggtgag ttgatgggca
1981 ccactcaact cttgccgagt caaatatgtg ccttcagggg cacgctcacc agatcaacaa
2041 gcagggccag tgaccaagct gacacggcaa cccctaggtt gttcaactac tattggcaca
2101 tacaattgga taatctaaat ggaaccccat atgaccctgc agaggacata ccagccccct
2161 tgggaacacc agacttccgg ggcaaggtct tcggcgtagc tagccagaga aaccctgata
2221 gtacaacaag ggcacatgaa gcaaaagtgg acacaacatc tggtcgcttc gccccgaaat
2281 tgggttccct agaaatatcc actgaatcca gtgattttga ctcaaaccaa ccaacaaggt
2341 tcaccccagt tggcattggg gttgacaatg aggcagattt tcaacaatgg tccctacctg
2401 actactccgg tcagttcact cacaacatga acttagcccc agctgtcgcc cccaatttcc
2461 ctggtgagca gcttctcttc ttccgttcac agctgccatc ttctggtggg cggtctaatg
2521 ggattctgga ctgcctggtc ccccaggaat gggttcaaca tttctaccag gaatcagccc
2581 ctgcccaaac acaggtagcc ctggttaggt atgttaaccc tgacactggc agagtgctat
2641 ttgaggccaa gttacacaaa ctgggcttca tgactatagc taagaatggt gattctccaa
2701 taactgtccc tccaaatggg tacttcagat ttgaatcttg ggtgaacccc ttctacacac
2761 ttgcccccat gggaactgga aatgggcgta gaaggattca ataatggctg gggcttttat
2821 agcaggattg gctggtgaca tgctcacaaa tactgtaggg tctttggtta atgcaggggc
2881 tagtgccatc aatcaaaaag ttgattttga gaataataaa tatttacaaa atgcatcttt
2941 tgttcatgat aaggagatgt taaatgcaca aattgaggca acaaagaggc tacagactga
3001 tatgattgct atcaaacaag gggttttgac cgctggcggc ttctccccca ctgatgcagc
3061 ccgtggggca atcagtgccc ccatgacaaa agttttggat tggagtggaa cgaggtactg
3121 ggcaccaaac gccacctcca caacctcaat gtcaggtggc ttcacaagcc aaactgtgca
3181 cagaaccaca ccaaatttta agacgaacca ggcccccaag cccgcaccca gcagtgggtc
3241 ttcagtgagg tcaaactcaa cccaacccac tagcttgagt tcacactcct ccggatcgtc
3301 tcgatccagc gggtctacgg ctgtcagctc attgtcatct tccaacagga ctagggattg
3361 ggtcaatcaa cagaattttg atttggaacc atacatgcct ggatctctta ggacagcttt
3421 tgtcactcca ccatctagta cagcctctag ttcaggcacg gtctcaaccg tgcccaaaag
3481 tgttttggac tcctggacat ctgcgtttaa cacgcgcaga caaccgctat ttgcacacct
3541 tcgtagaagg ggggagtcaa atgtttagtg aaaagattat cttaaattta atttggattg
3601 gatttaattc ggaatctttt
//