Typing tool
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Complete norovirus genomes
AB187514 | GI.3 | ||
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GI.P14 |
ORF1: 5..5404 ORF2: 5388..7019 ORF3: 7019..7666LOCUS AB187514 7746 bp RNA linear VRL 01-SEP-2005 DEFINITION Norovirus Hu/GI/Otofuke/1979/JP genomic RNA, complete genome. ACCESSION AB187514 VERSION AB187514.1 KEYWORDS . SOURCE Norovirus Hu/GI/Otofuke/1979/JP ORGANISM Norovirus Hu/GI/Otofuke/1979/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Wakuda,M., Sasaki,J. and Taniguchi,K. TITLE Complete nucleotide sequence of genome of Otofuke virus, a member of Caliciviridae, associated with acute non-bacterial gastroenteritis JOURNAL Unpublished REFERENCE 2 (bases 1 to 7746) AUTHORS Taniguchi,K. and Wakuda,M. TITLE Direct Submission JOURNAL Submitted (11-AUG-2004) Koki Taniguchi, Fujita Health University School of Medicine, Department of Virology and Parasitology; Kutsukake, Dengakuga-Kubo 1-98, Toyoake, Aichi 470-1192, Japan (E-mail:kokitani@fujita-hu.ac.jp, Tel:81-562-93-2467, Fax:81-562-93-4008) FEATURES Location/Qualifiers source 1..7746 /organism="Norovirus Hu/GI/Otofuke/1979/JP" /mol_type="genomic RNA" /strain="Otofuke" /db_xref="taxon:290280" /country="Japan" CDS 5..5404 /function="nonstructural" /note="A polyprotein is cleaved to helicase, VPg, protease, and RNA-dependent RNA plolymerase; ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="BAE43832.1" /translation="MMMASKDAIAVADVSNNNANTNNENIGSRLMARLRGRIGPQRGE NTTKIKDANMALDLLRRSQTPSPSRQDHPPKDQRDRPPRTAMEVRKTMGWDEEPRQQE STVKAWCDLAREEKEEIMRNNEKLFDAGGVAPAILPSTFERATPHESTDECQAVTWSA SDGVDIGVDSLKTVRGPPWNMCPLPPLEARNSGPAREPLIGDMVEFYEGHIFHYAIYI GQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYTPTDQQRLTYDQLRELENEPWPYAS ITNNCYEFCCKVMALDDTWLQRKLVTTGKFNHPTQEWSKDTPDFHQDSKLEMVRDAVL SAINGLVSQPFKNILSKIKPLNLINLLSNCDWTFMGVVELIVLVAELFDVFWTPPDIS SFIASLLPDFHLQGPEDLAKDLVPLILGGIGLAIGFTRDKVTKVMKSAVDGLRSATQL GQYGLEIFSIIKKYFFGGDQTERTLRGIEDAVIDMEVLSSTNVTQLVRDKKSAKAYMN ILDIEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRIRPVVIMMC GPPGIGKTKAAEHLASRLATEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKI TEDCNKLQAIADTAPLSLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRR VDFLVYCSAPEIEQARRAHPGDTNAIKDLYKKDFSHLKMDLAPQGGFDNQGNTPFGKG VMKPTTLNRLLIQATALTMERQDEFQLQGMVYNFDEDRVAAFTSLARANGLGLINMAT LGKKLRNVKTMEGLRNALVGYRIEECDIIWNTRAYSIKSDGKSVTIKEKQNQTSSQHQ AVSTATLALSRLRAARAIAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTSTEQPAL EGGHKEHNCRVHRAQAAGHGPIGHDGVIERYGLCESEQEDESDQVVELPLANREGKNK GKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAE VQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTPP KNDWSEDTRSVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKE IFGEALNNVAVHRVGEFTQFRFSKKMRPDLTGMVLEEGCSEGTVCTIMIKRDSGELLP LAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVC GVHAAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWK STPQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVE TVTNAIEQVMDTPVAWSFSDACMSLDKTTSSGHPHHKKKNDDWNGSSFVRELGDQAAH ANNMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCE AIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHYDADYTAWDSTQNREIMMESFNIM CKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWILTLCA LSEVTGLSPDVLQSQSYFSFYGDDEIVSTDVEFDPNKLTQVLKEYGLKPTRPDKTDGP IVVKQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHSQR KVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWT GDRDLLPDYVNDDGV" CDS 5388..7019 /function="structural" /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="BAE43833.1" /translation="MMMASKDAPTNMDGTSGAGQLVPEASTAEPISMEPVAGAATAAA TAGQVNMIDPWIMSNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG WVGNMKVRVLLAGNAFTAGKIIISCVPPGFAAQNVSIAQATMFPHVIADVRVLEPIEV PLEDVRNVLFHNNDSTPTMRLICMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFNFL FLVPPNVEQKTKPFSVPNLPLNVLSNSRVPSLIKSMMVSQDHGQMVHFQIGRVTLDGQ LQGTTPTSASQLCKIRGTVYHATGGQGLNLTEIDGTPYHAFESPAPIGFPDLGECDWH INASPANAFTDGSIIHRIDVAQDSTFAPHLGTIHYTNANYDANVSLICSLEWLSPPSG GAPKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGSDGLSVPCTI PQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQTL PINGVFTFISWVSRFYQLKPVGTTGPVRRLGIRRS" CDS 7019..7666 /function="unknown" /note="ORF3; ORF3 encodes small basic protein of unknown function" /codon_start=1 /product="basic protein" /protein_id="BAE43834.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN TFKHDKEMLGLQVGASTALLQNSLSTRYNMLTNAGLSSSDAARLVVGAPATRVVDWNG TRVSAPRSSATTLKSGGFMTIPTLYKGKQQQKAPTQAGFSNPNYGSVASSRTADWVSS QNSTRSSLGPYHPSALQMTWVTPPGSSSTSTVSSVSTAPRYFNTDRLPLFANMRK" ORIGIN 1 gtgaatgatg atggcgtcaa aagacgctat tgccgttgct gatgtcagca ataacaatgc 61 taacaccaac aatgaaaaca ttgggtctcg ccttatggcg aggctccgcg gacgtatagg 121 tccgcagcgt ggtgaaaaca ccacaaaaat aaaggatgcc aatatggcac tcgaccttct 181 tcgccggtca caaacaccct ccccatcccg gcaagaccac cccccaaaag accaaagaga 241 tcgtccaccg cgcactgcta tggaggtgag gaagacaatg gggtgggatg aagagccaag 301 acagcaggag agcaccgtta aggcgtggtg cgacctcgca agggaggaaa aagaggagat 361 aatgcgcaat aacgagaagc tctttgatgc tgggggggtt gctcctgcaa ttttaccaag 421 cacattcgag agagccacgc cacacgaaag cactgatgaa tgtcaggcag tgacctggtc 481 cgccagtgat ggcgtggaca ttggtgtgga cagcttaaaa acagtccgtg gccctccttg 541 gaatatgtgc cccctgccac ctttggaggc tcgcaacagt ggacctgcaa gagagcccct 601 tataggggat atggttgagt tttatgaggg ccatattttt cattatgcca tctatattgg 661 acaaggaaag accattggtg tccactcacc acaggcagcc ttttctatac ctagaataac 721 tatccatcca ttagtagctt ggtggcgggt gtgttacaca cccacagacc aacaaagact 781 cacctatgac caattaagag aattggagaa tgagccatgg ccctatgcct caatcaccaa 841 caattgttat gagttctgtt gcaaagtaat ggcacttgat gacacttggc tccaacgaaa 901 attggtcacc actggaaaat ttaaccaccc cacacaggaa tggtcaaaag acactcctga 961 ctttcaccaa gattcaaagc ttgagatggt tcgggatgct gtgctgtcgg ccatcaatgg 1021 tcttgtgtca caacctttca aaaacattct gtcaaaaatc aagcctctga acctgattaa 1081 cctattgtca aattgtgact ggacttttat gggagttgtg gagctgatag tgcttgtggc 1141 cgaactattt gatgtatttt ggacaccgcc agacatctcc agttttatcg catcactatt 1201 gcctgatttc cacctccagg gtccagagga tttggcaaag gatctggtcc cccttatatt 1261 aggtggaatt ggccttgcaa ttggctttac aagggacaaa gtcaccaaag ttatgaagag 1321 tgccgttgac ggattgcgct cggcaacaca acttggacaa tatggattag agatattctc 1381 aattataaag aaatatttct ttgggggtga ccagacagag agaaccttgc gaggcattga 1441 agatgctgtg atagacatgg aggtgctgtc cagtacaaat gtgacacaat tagttaggga 1501 taagaaatca gccaaagcat acatgaatat attggacatt gaggaggaaa aagctaggaa 1561 actttcagtc cgtagcgctg acccacacat agtaacctca gtaaataatc tgatatcccg 1621 tatctccatg gcaaggtcag ctttggctaa agcccaggca gagatgacat cccgtatacg 1681 cccagtggtg atcatgatgt gtggcccccc aggcattggt aaaacaaaag ctgctgagca 1741 cttagccagc cggttggcca ctgaaatcag accaggtggc aaggttgggc tcgtgccccg 1801 tgaatccata gaccattggg acggttatca tggtgaagag gtcctgttgt gggatgacta 1861 cggcatgtca aagataacag aagattgtaa caagttacaa gccattgctg acactgcacc 1921 actgtcactg aattgtgaca ggatagagaa caaaggcatg cagttcgtct ctgatgcaat 1981 aattataaca accaatgctc ctggcccagc cccagtcgac tttgtcaatt taggacccgt 2041 gtgcagacgg gtagattttc tagtctactg ttctgcgcct gaaattgaac aggcacggag 2101 ggcccaccca ggcgatacca atgctataaa agacttgtat aagaaagact tctcacacct 2161 aaagatggat ctggctccac aggggggctt tgataaccag ggtaacacgc cctttggcaa 2221 gggtgtgatg aaacccacta cccttaacag actactaatc caagccactg cgctgaccat 2281 ggaaaggcaa gatgaattcc aactccaagg catggtttac aactttgatg aggacagggt 2341 ggcagcattc accagcttgg ctcgtgctaa cgggttgggg cttatcaata tggcaactct 2401 gggcaagaaa ctaagaaatg ttaagaccat ggaagggctg cgcaatgcgc tggtggggta 2461 ccggatagaa gagtgtgaca taatttggaa taccagagct tattcaatta agagtgatgg 2521 caaaagtgtg acaatcaagg agaagcaaaa tcaaacctca tcccaacatc aagctgtcag 2581 tacggccacc ctcgcgctct ccaggctacg ggctgcccga gcgatagcgt atgcatcctg 2641 cctacaaagt gccgtccttt ccatacttca ggtggctggt tctgctgtag tggtgagcag 2701 ggcggtgaaa cgcatgtttg gcacgagtac cgaacagccc gcattggagg gtggacataa 2761 agagcacaac tgtagggtcc atcgggcaca ggccgcaggt catggtccca taggacatga 2821 tggggtcatt gagcgctacg gtctgtgtga gagtgaacaa gaggatgaaa gtgatcaagt 2881 cgtggaactg ccattagcca acagggaagg taaaaacaag ggtaagacca agaagggccg 2941 tggccgcaag tccaatttta atgctttttc acgacgtggg ctcagtgatg aagagtatga 3001 ggagtacaag aagatcagag aagaaaagag tggtaattac agcattcagg aataccttga 3061 agatcgccaa cgctatgagg aagaacttgc cgaagtccaa gcaggcgggg atggtggaat 3121 tggtgaaact gaggcagaaa tccgccaccg ggtcttctat aagtcaaaat ctggtatgag 3181 gaagcagcgc caggaagaga ggcgacaatt ggggctcgtt agtggtactg agatccgcaa 3241 gcgcaagcct atagattgga ccccccctaa aaatgactgg tctgaagaca ccaggtcagt 3301 caattatgat gaacacatta gctttgaggc ccctccttca atttggagca gagttgtcaa 3361 atttggtagc ggctggggat tttgggtgag ctcaacagtg ttcatcacta caacccatgt 3421 tataccacct ggagctaagg agatttttgg ggaagccctt aataatgtcg ccgtccacag 3481 agttggtgag ttcactcagt tccgtttctc caagaagatg agacctgacc tcacaggtat 3541 ggtcttggaa gaaggatgct cagagggcac agtgtgcacc atcatgataa aaagggactc 3601 tggtgagcta ctgccactcg ccgtgcgcat gggggcagtt gcttcaatga agattcaagg 3661 gaagctcatg catggtcagt cggggatgct gctcactggt gccaacgcta aaggcatgga 3721 ccttggcacc atacctggag actgtggagc gccttatgtc cacaagagag gaaatgattg 3781 ggtggtgtgt ggagtacatg ctgcagccac aaaatcaggc aatacagtgg tgtgcgcaat 3841 ccaaggtggt gaaggtgaag ccacactaga gggtggtggt caaaataaag gccactatgc 3901 tggacaccca atactaaggt atgggaatgg accatctcta tcaactaaaa caaagttttg 3961 gaagtcaacc ccacaacccc taccccctgg cacttacgaa ccagcctatc tggggggcag 4021 agacccgaga gttgacgggg ggccatcttt acaacaagtg ctcagagacc agcttaaacc 4081 ttttgctgaa cctcgtggta ggttaccaga agctgggcta ttagaggcag cagtggaaac 4141 agtcaccaac gcaatagaac aggtcatgga cacaccagtg gcatggagct tcagcgatgc 4201 ctgcatgtct ctagataaga ccaccagttc tggccacccc catcacaaaa agaagaacga 4261 tgattggaac ggaagctcat ttgtacggga actgggagat caagctgctc atgccaacaa 4321 catgtatgag cttggaaaat ccatgaaacc agtatacact gcagccctca aagatgagct 4381 tgtgaagcca gacaaagtat acaataaaat taagaaaagg ctgttgtggg gagcggacct 4441 cggcaccgtt atccgagctg ctagagcgtt tggtcctttc tgtgaagcta taaaacccca 4501 tgtcatcaaa ctgcctatca aggttggcat gaatgctata gaagatggcc cattgatcta 4561 tgcagagcac tccaagtata aatatcatta tgatgctgat tacacagctt gggactcaac 4621 ccaaaacagg gaaatcatga tggagtcctt taacatcatg tgcaagctca cggccaatcc 4681 ctccttggct gctgtggtcg cccaggattt gctctcccca tctgagatgg acgtgggaga 4741 ctatgtgata agtgtcaaag acggtttacc atcaggtttt ccatgcacat cacaggttaa 4801 cagcatcaac cactggatcc tcactctttg tgctctatca gaagtcactg gtctgtcccc 4861 tgatgttctt cagtcacaat cctacttctc cttctatggt gatgatgaaa ttgtctccac 4921 ggatgttgaa tttgacccaa ataaattgac acaggtgctc aaggaatatg gcctaaaacc 4981 cacaagaccc gataaaactg atggacccat tgtggttaaa cagcaagtgg atggcctggt 5041 cttccttcgg cgcaccatct caaaggacgc cattgggtac caggggcggc ttgaccgcaa 5101 ttccattgaa agacaacttt ggtggacccg tggcccgaat catgatgacc catttgaaac 5161 tttggttcca cactcacaaa gaaaggtcca gttaatatcc ctattaggtg aagcagcact 5221 ccatggtgag aaattctaca gaaaaatagc aagcagagtc atccaggagg taaaggaagg 5281 tgggctagaa atctacatcc ctggatggca agccatgttc cgctggatgc gtttccatga 5341 tctgagtttg tggacaggag atcgcgatct cctgcccgat tatgtaaatg atgatggcgt 5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc tggtcagctg gttccagagg 5461 caagtacagc tgaacctata tcaatggagc ctgtggctgg tgctgctaca gcagcagcaa 5521 ccgcaggtca agttaatatg attgacccct ggattatgag taattatgtt caagcccctc 5581 aaggagagtt cacaatttcc cctaacaaca ctcccggaga tatattgttt gatttacaat 5641 tagggcccca tttgaaccca ttcctatcac acctggccca gatgtacaat ggatgggttg 5701 gtaatatgaa agttagggtg ctgctcgctg gtaatgcctt cacagcgggt aaaataataa 5761 ttagttgtgt tccccctggt tttgcagccc aaaatgtctc aatagcccaa gcaacaatgt 5821 ttccccacgt tattgcagat gtgagagtgc ttgaaccaat tgaagttcca ttagaggatg 5881 tgaggaatgt gctcttccac aataatgact ccactccaac tatgagattg atttgtatgt 5941 tgtatacccc tctccgtgct agtggcagct cctctggcac tgatccattt gtcatagctg 6001 gacgggtcct cacctgtccc agtcctgact ttaacttttt gtttcttgtg ccccccaatg 6061 ttgagcagaa aactaaacca tttagtgtac ctaatctccc cctcaatgtt ctctcaaatt 6121 ctagggttcc ctctttgata aagtctatga tggtctccca agaccatggg cagatggtgc 6181 acttccagat tgggagggtc acattagatg gacagctcca aggtaccact cccacttcag 6241 ctagtcagct ctgcaaaatt cgagggacgg tttaccatgc aactggtggc caagggctta 6301 atttgactga gattgatggg actccctacc atgcatttga gagccccgcc ccaattggtt 6361 tccccgattt gggtgagtgt gattggcata ttaacgcatc tcctgctaat gctttcacag 6421 atggtagtat catacacaga attgatgtgg cccaggattc cacttttgct ccccatctag 6481 gcactatcca ctataccaac gctaactatg atgccaatgt tagcctaatt tgttcacttg 6541 aatggctctc ccccccaagc gggggtgctc caaaggttaa cccatgggct attcctcgat 6601 acggttcaac cctgactgag gctgcccagt tggccccacc aatataccct cccggatttg 6661 gcgaggcaat tgtcttcttt atgtctgatt tccccatagc taatggttca gatggtttga 6721 gtgtcccttg cactatacca caagagtttg tgacccattt tgttaatgaa caagcaccca 6781 ctcgtggtga ggctgcactg ttgcactatg ttgaccctga cacacatcgc aatttgggcg 6841 aattcaaatt ataccctgaa ggttttatga cttgtgtccc caactccagt ggtagtggac 6901 cccagacact gcctatcaat ggggttttca ctttcatttc ctgggtttct cgcttctatc 6961 aattaaagcc tgtgggaacg accggtccgg tccgtaggct aggcattcgg aggtcataat 7021 ggcccaagcc ataattggag caattgctgc aacggctgct ggtagtgctg tgggagctgg 7081 catccaggct ggtactgagg ctgcgctcca acaccagcgc tttcagcagg atctcacgtt 7141 gcaaagtaac accttcaaac atgacaaaga gatgcttggg ttgcaggttg gggcgtctac 7201 tgcacttttg caaaatagcc tcagcactcg ctacaatatg ctaactaatg ctggcctatc 7261 ctcctcagat gcggcacggt tggtggttgg tgctccagcc acgcgtgttg tggattggaa 7321 cggcaccagg gtgtcagctc cacggtcatc tgccactacg ttgaagtctg ggggtttcat 7381 gacaatacca accctctaca agggcaagca acagcagaaa gcacccacac aggccggctt 7441 ttcaaatcct aactatggct cagtagcctc ctctagaact gctgactggg tttcttctca 7501 aaattcaacc cggtcttctc ttggccctta tcatcctagt gcattacaga tgacatgggt 7561 aaccccacct ggttctagct ccacctctac tgtttcttct gtgtctactg cacctaggta 7621 ttttaatact gataggttgc ctctattcgc aaatatgagg aaatgatttt tgtaatatga 7681 aatgtgggca tcatattcaa ttagatctaa ttatattttg atttggtttg atttggtcat 7741 gatgtt //