Typing tool
|
Complete norovirus genomes
AB042808 | GI.4 | ||
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GI.P4 |
ORF1: 5..5362 ORF2: 5346..6980 ORF3: 6980..7606LOCUS AB042808 7697 bp RNA linear VRL 06-JAN-2001 DEFINITION Chiba virus genomic RNA, complete genome. ACCESSION AB042808 VERSION AB042808.1 KEYWORDS . SOURCE Chiba virus ORGANISM Chiba virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Someya,Y., Takeda,N. and Miyamura,T. TITLE Complete nucleotide sequence of the chiba virus genome and functional expression of the 3C-like protease in Escherichia coli JOURNAL Virology 278 (2), 490-500 (2000) PUBMED 11118371 REFERENCE 2 (bases 1 to 7697) AUTHORS Someya,Y., Takeda,N. and Miyamura,T. TITLE Direct Submission JOURNAL Submitted (17-MAY-2000) Yuichi Someya, National Institute of Infectious Diseases, Department of Virology II; Toyama 1-23-1, Shinjuku, Tokyo 162-8640, Japan (E-mail:someya@nih.go.jp, Tel:81-3-5285-1111(ex.2523), Fax:81-3-5285-1161) FEATURES Location/Qualifiers source 1..7697 /organism="Chiba virus" /mol_type="genomic RNA" /strain="Hu/NLV/Chiba 407/1987/JP" /db_xref="taxon:99565" gene 5..5362 /gene="ORF1" CDS 5..5362 /gene="ORF1" /function="nonstructural" /note="A polyprotein includes RNA helicase, VPg, protease, and RNA polymerase" /codon_start=1 /product="polyprotein" /protein_id="BAB18266.1" /translation="MMMASKDVVAATAASAENTSDNSDSIKNRFFTRLKNLGSNNKPI KIENTHMALNLISRGSSPVPQDKPPKDQRDKPPRNVAETQQAMGWIDPPVDQNLPTWE ELSQTEKQEILKNNSNWFDAGGLAPASIPSGYVKNTEQQPPDHQVKWSANNGVDLGVD SLTTVPGPAWNLCPMPPIDQRNNGPAREPLIGDMIEFYEGHIYHYAIYIGQGKTVGVH SPQAAFSIARITIHPIAAWWRVCYIPTPDQRLNYDQLKELENEPWPYAAVTNNCYEFC CRILNLQDTWLERRLVTSGRFNHPAQDWSRDTPDFQQDSKLEIVRDAVLAAINGLVSK PFKDLLNKLKPLNVLNLLSNCDWTFMGVVETIILLMELFGIFWNPPDVSSFIASLLPD MHLQGPEDLAKDLIPLVLGGVGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFA VLKKYFFGGDQTEKTLKDIETAVIDMEVISTTAVTQLVRDKQAARTYMNILDAEEEKA RKLSVRHADPHVVSTTNALISRISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTK AAEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQA IADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTA PDVEQTRRTNPGDTGALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNR LLIQAVALTMERQDEFQMQGQVYDFDADRVSAFTSLARANGLGLISMASLGKKLRGVD SVHGLKNALSGYTITPCSIKWQARVYDIESDGTNVQIKENTSAQTQRQQSIDTAALAL TRLKAARAAAYAACIQGAITTILQMAGSAIVINRAVKRMFGAHSSTIALEGPPREHRC RAHLAKAAGGGPIGHDDVIDKYGLCETEEEGTSEEMNVELPTATSEGKNKGKTKKGRG RRANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGG IGETEMEIRHKIFYKSKKGRQNERRQLGLVTGSDIRKRKPIDWTPPKNDWADDNREVD YNEKLSFEAPPTLWSRVVRFGSGWGFWVSPTVFITTTHVIPTGVREFFGEPIESIAIH RAGEFTQFRFSRKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMK IQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNT VVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPA YLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPT PWSFSDACQSLDKTTSSGHPYHKRKNDDWNGTSFVGELGEQAAHANNMFELGKSMKPL YTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPIKVG MNSIEDGPMIYAEHAKYKNHFDADYSAWDSTQNRQIMTESFAIMCRLTASPELASVVA KDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQS QSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLR RTISKDAAGFQGRLDRGSIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLH GEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG V" gene 5346..6980 /gene="ORF2" CDS 5346..6980 /gene="ORF2" /function="structural" /note="ORF2 encodes a capsid protein which makes nucleocapsid." /codon_start=1 /product="capsid protein" /protein_id="BAB18267.1" /translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ PLGTTPVSVSQLCKFRGRITSGQRVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE MSKIPNSSTQNNPIVTNSVKPNSQQFVPHLSSITLDENVSSGGDYIGTIQWTSPPSDS GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR" gene 6980..7606 /gene="ORF3" CDS 6980..7606 /gene="ORF3" /function="unknown" /note="ORF3 encodes a protein rich in basic amino acids, whose function is unknown" /codon_start=1 /product="basic protein" /protein_id="BAB18268.1" /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN SFNHDKEMLGYQMEMSNKLLAKNLNTRYSLLQAGGLSSSDAARAVAGAPVTRLVDWGG VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPVQRTASWVQSQNSS RSWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR" ORIGIN 1 gtgaatgatg atggcgtcga aagacgtcgt tgcagctact gctgctagtg ctgaaaacac 61 tagtgacaat agtgattcta taaagaaccg cttcttcaca agattgaaga atttaggttc 121 taacaataaa cctataaaaa ttgagaacac ccacatggcc ctcaacttaa ttagtagggg 181 gtcatctcca gttccacaag ataagccccc taaagatcag cgggacaaac ccccaaggaa 241 tgtggccgaa actcaacaag caatgggatg gattgacccc cccgtggatc agaatctacc 301 aacctgggag gaattgagcc aaacagagaa acaagagata ctcaaaaaca actcaaattg 361 gttcgatgct ggtggattgg caccagctag catcccttcc ggttatgtga agaacacaga 421 gcagcaaccc cctgaccacc aagtcaagtg gagtgccaat aacggggttg atctgggggt 481 ggacagttta accactgtgc caggcccagc atggaatcta tgccccatgc caccaattga 541 tcagcgtaac aatggtccag caagagagcc acttattggt gacatgatag agttctatga 601 gggtcacatc taccattatg caatatatat tggccaagga aaaactgttg gggtccactc 661 acctcaagcg gccttttcaa tagccagaat aactatacac cccattgctg cttggtggag 721 ggtttgttac ataccaacgc ctgatcagag gttaaactat gaccaactca aagagcttga 781 gaatgagcca tggccatatg ctgcagtcac caataactgc tatgagttct gctgcaggat 841 tcttaacctg caggatactt ggttagaacg ccgtttggtc acatctggtc gttttaacca 901 cccagcacaa gactggtcca gggacacacc tgacttccaa caagatagca aactagaaat 961 agttagggac gccgtgcttg ctgctatcaa tggcctggtg tcaaagccct ttaaagatct 1021 cctaaataaa cttaagccac tcaacgtgct caacctactc tccaattgtg attggacatt 1081 tatgggagtg gtggagacga taatattact catggaattg tttgggattt tctggaaccc 1141 ccctgatgtg tccagcttta tagcctcact actacctgac atgcacttgc aaggaccaga 1201 agatctggct aaagacttaa taccattggt gttggggggt gtagggcttg caattggatt 1261 tactaaggac aaagtcacaa aggttatgaa aagtgctgtt gaagggctga gggcagccac 1321 acaactgggt caatatggcc tagaaatatt tgcagtttta aagaaatatt tctttggtgg 1381 agatcaaaca gagaagactt taaaggatat tgaaacagcc gtgatcgaca tggaggtcat 1441 ctcaacaact gctgtcacgc aactggttag ggacaaacag gctgcccgaa cttacatgaa 1501 catcttggat gccgaagaag aaaaggcaag aaagctttca gttagacatg cagaccccca 1561 tgtcgtgtcc acgactaatg ctttgatctc acgtatttca ctggctcgct ccgcacttgc 1621 taaagcacaa gctgagatga ccaatagggt taaaccagta gtaataatga tgtgtggtcc 1681 cccaggcata ggcaagacaa aggcagctga gtaccttgct aagagattgg ccaatgagat 1741 acggcctgga ggaaaagttg gcctcgtgcc acgagaggct gtggatcatt gggatggata 1801 tcatggtgaa gaggttatgc tatgggatga ttatggtatg tcaaagatag ccgatgactg 1861 taataagttg caggccatag ccgacacagc cccactcacc ttgaattgtg atcggattga 1921 gaagaaagga ttacagttcg tctctgatgc catagtgata acaacaaatg ccccaggccc 1981 agctccagtc gactttgtca atcttggccc agtgtgtcgg cgggtagatt tcttggttta 2041 ctgcaccgcg cccgatgttg aacaaacacg tcgcactaac cctggagaca ctggagccct 2101 taaggattgt ttcaaaagtg acttctctca tctaaaaatg gagttagccc cacagggcgg 2161 atttgataat caaggaaata ctccatttgg taaagggacc atgcggccca ccacattaaa 2221 ccgtctcctc atacaggctg tggcactaac catggagcgc caggatgagt tccagatgca 2281 aggccaagtg tatgattttg atgctgacag ggtttccgcc tttactagtt tagcaagagc 2341 caatggtctg ggcctcatta gcatggcctc tctaggaaag aaattgaggg gcgtggactc 2401 ggttcatggc ctcaagaatg cattatcagg ctataccata accccttgta gtataaaatg 2461 gcaggctaga gtgtatgaca ttgaatcaga tggtactaat gtacaaataa aggaaaacac 2521 ctcagcccaa actcaacgcc agcagtcaat tgacacagct gccctagcac tcactaggct 2581 taaagcagca cgggcagcag cgtatgcagc ttgcatacaa ggcgcaataa caactatcct 2641 gcagatggct ggatcggcca tcgttataaa tcgtgctgtg aaaaggatgt ttggggcaca 2701 ctcaagcacc atagcccttg aagggccgcc aagagaacat cggtgtaggg ctcatttggc 2761 caaggctgca ggtggtggac caataggcca tgatgatgtc atcgataagt atggcctatg 2821 tgagactgag gaggaaggca ccagcgagga gatgaatgtg gagcttccca ccgccacttc 2881 tgagggtaaa aacaaaggaa agaccaagaa aggaaggggc agaagagcca actacaatgc 2941 tttttcaagg cggggtctga gcgatgaaga atacgaggag tacaagaaga tcagggaaga 3001 aaagaatggt aattacagta tccaggagta tcttgaagac agacaacgct atgaagaaga 3061 gctcgcagaa gtgcaagctg gtggagatgg aggcattggt gagacagaaa tggagattcg 3121 acacaagatc ttctataaat ccaaaaaggg tcgccaaaat gagcgccgcc aattaggact 3181 agtcactggc agtgacatca gaaagagaaa accaattgat tggacccccc ccaaaaatga 3241 ttgggcagat gataataggg aagtggatta caatgaaaaa ctcagttttg aagccccacc 3301 aaccctctgg agtcgagtcg tgagatttgg ctctgggtgg ggcttttggg tgagcccgac 3361 tgtttttatc accaccaccc atgttatacc aactggggtg cgtgaattct ttggggagcc 3421 cattgaatct atagcaatcc atcgtgctgg tgaatttaca caattcaggt tttcacgcaa 3481 agtccgcccg gatctgactg gaatggtgtt ggaggaaggc tgtcctgagg gtgtcgtgtg 3541 ttctattctt atcaagcgtg actctggtga gctgctaccc cttgctgtcc gaatgggcgc 3601 tatagcgtcc atgaagatcc agggaaggct agtgcatggt caatctggga tgctgctcac 3661 tggggctaac gctaagggga tggatttagg taccctacca ggtgattgtg gtgcccctta 3721 tgtgtacaaa agaaacaatg actgggtggt ttgtggtgta catgcagctg ccacgaagtc 3781 aggtaacact gtagtatgtg ctgttcaggc tggggaaggt gaaaccaccc tagagggtgg 3841 tgataaaggc cactatgctg gccatgagat aatcaagcat agcaagggcc cagctttatc 3901 aaccaaaacc aagttttgga gatcaacccc tgagccatta ccaccaggtg tttatgaacc 3961 agcatacctt gggggtcgtg acccaagggt aaaaggtgga ccttccctac aacaagtcct 4021 gcgtgatcag ttgaaaccat ttgccgagcc acgaggccgg atgccagagc ctggtttact 4081 tgaggcagcc gttgaaactg tcacatccat gcttgaacaa acaatggata caccaacccc 4141 ctggtctttc tctgatgcat gtcaatcact tgacaagacc acaagttcgg gacacccata 4201 ccataaaagg aaaaatgatg attggaatgg aacttcattt gttggggagc ttggagaaca 4261 ggcggcacat gccaacaaca tgtttgaatt gggcaagtct atgaagccac tttacaccgc 4321 ggccctaaag gatgaattag tcaagcctga gaaagtttat caaaagatta agaagaggct 4381 tctctggggt gctgatctct caacagttat aagggctgct agagcctttg gaccattttg 4441 tgatgctata aagccccatg tcattaaact ccctattaaa gttggtatga actccataga 4501 agatggtcca atgatttatg cagaacatgc aaagtataag aatcattttg atgcagatta 4561 ctcggcctgg gattccacac aaaatagaca gatcatgact gagtcctttg caatcatgtg 4621 ccgccttacg gcatcaccag aattggcctc tgttgtagcc aaagatctac ttgcgccttc 4681 agagatggat gttggggact acatcatccg tgtaaaagaa ggtttgccat caggatttcc 4741 ttgcacttca caggtgaaca gtataaacca ttggctaatc acattgtgtg ctatgtctga 4801 agtcacaggc ctgtcacctg atgtcataca atctcagtct tacttttctt tctatggtga 4861 tgatgagata gtctcaacag atattgattt tgaccccgcc cgcctcactc aagtgcttaa 4921 ggaatatgga ttgagaccca cccggccaga caaatcagaa ggacccatta tacttagaag 4981 acaggtagat ggtctcgttt tcttaaggag gacaatctca aaagatgctg caggctttca 5041 gggaaggcta gatagaggct caatagaaag gcagctctgg tggactcgag gccctaacca 5101 tgatgatcct agtgagactt taatcccaca ccctcagagg aaagttcagc ttatatccct 5161 ccttggcgag gcttcccttc atggtgagaa gttttatagg aaaatctcca gtaaagtcat 5221 acaggagata aagactggtg gtttggaaat gtatgtgcca ggctggcagg ctatgttccg 5281 ctggatgcgc ttccatgatc tcggattgtg gacaggagat cgcaatctct tgcccgaatt 5341 cgtaaatgat gatggcgtct aaggacgcta caccaagcgc agatggcgcc actggcgccg 5401 gccagctggt accggaggtt aatacagctg accccatacc tattgaccct gtggctggct 5461 cctctacagc ccttgccaca gcaggccagg ttaatttgat tgatccctgg ataatcaata 5521 attttgtgca agccccccag ggcgagttca caatatcccc aaataatacc cccggtgatg 5581 tgctttttga tttgcaatta ggaccccatt taaatccttt cctttcccac ctttctcaga 5641 tgtataatgg ttgggtgggc aacatgcgag tgcgtgttgt cttggctggt aatgctttca 5701 cggctgggaa ggttataatt tgttgtgtcc cccctggttt ccaatctcgc accctttcta 5761 tagcccaggc tactttattt ccccatgtta ttgctgatgt taggaccctt gaccctgtag 5821 aagtgcccct tgaagatgtt aggaatgtgt tgtatcataa taatgacacc caacccacca 5881 tgcgcctcct ttgcatgttg tacactcctc tccgcaccgg gggagcgtct ggtgggactg 5941 attcttttgt ggtggctggg cgtgtactca cttgtccggg ccctgacttt aacttcttat 6001 tcctagtccc tcccacagtc gagcaaaaga cccgcccttt tactgtgcct aatatccctt 6061 tgaagtacct gtctaattcc aggatcccaa atcctattga aggtatgtca ttgtcacctg 6121 accagaccca aaatgttcaa ttccagaatg gtaggtgtac aattgacggt caaccccttg 6181 ggaccacacc tgtctcagtt agtcagttat gtaagtttag gggtaggatt acatctggac 6241 agagagtgct caacttgaca gagttggatg gttcaccttt tatggccttt gccgcccccg 6301 cccctgcggg ctttccagat cttgggtcct gtgattggca tattgaaatg agtaaaatcc 6361 caaattccag cacccagaac aacccaatag tgaccaattc tgtcaaaccc aatagtcaac 6421 agtttgtccc acacttgtca agtatcaccc ttgatgaaaa tgtttccagt ggaggtgact 6481 atattggcac tatacaatgg acctcacctc cttctgattc tggcggggcc aatacaaatt 6541 tttggaaaat ccctgactat gggtccagcc tagcagaagc ttcacaactg gcccccgctg 6601 tctatccacc tggtttcaat gaggtgattg tgtattttat ggcatctata cctggtccca 6661 atcagtctgg gtctcctaat ttagtgccat gcctgctccc ccaggaatat ataacacact 6721 ttattagtga gcaggccccc atccagggtg aggctgcctt actccactat gtagacccag 6781 acaccaatcg caatttgggt gagttcaaat tatatcctgg tggttattta acctgtgttc 6841 ctaatagttc tagtactgga cctcaacaac ttcctcttga tggtgtattt gtctttgctt 6901 cttgggtttc tagattttat caattaaagc ctgtgggaac agccggaccg gctagaggta 6961 ggcttggtgt ccgtagataa tggcccaagc cattatagga gccattgccg cctccgcagc 7021 cggtagcgcc cttggtgctg gcatccaggc tggtgctgaa gctgcgttgc aggcacagag 7081 atatcaacaa gatctgactt tgcagcaaaa ttcttttaat catgataagg aaatgttagg 7141 ttatcaaatg gaaatgtcca acaagttgct agctaaaaat cttaacaccc gctattctct 7201 tctccaggcg ggtggcctct catcctctga tgcggctagg gctgtagccg gggcccccgt 7261 cactaggttg gtcgactggg ggggagtgcg tgttgcggca ccccaatcat ctgccaccac 7321 attgagatct ggtaatttta tggctgtgcc actcccagct cagccaaaac agaagcccct 7381 tgccagtgaa ggttattcta accctgctta tgaccctgtg caacgcacag cctcttgggt 7441 tcaatctcag aactccagcc ggtcttggtc tccataccat aggcaagccc ttcagactgt 7501 gtgggtgacc ccccctggtt ctacctcttc ttcttctgtt tctactgccc ctcgagggta 7561 tttcaataca gatagattgc ctctattcgc aaacttgagg cgttaatgtt gtaataagat 7621 tagtgagcat cctattcaat ttttggcttt atataatttg gttataattg gcttttaatt 7681 ttgatttggt tgatgtt //