Typing tool
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Typing tool
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Complete norovirus genomes
| AB042808 | GI.4 | |
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| GI.P4 |
ORF1: 5..5362
ORF2: 5346..6980
ORF3: 6980..7606
LOCUS AB042808 7697 bp RNA linear VRL 06-JAN-2001
DEFINITION Chiba virus genomic RNA, complete genome.
ACCESSION AB042808
VERSION AB042808.1
KEYWORDS .
SOURCE Chiba virus
ORGANISM Chiba virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Someya,Y., Takeda,N. and Miyamura,T.
TITLE Complete nucleotide sequence of the chiba virus genome and
functional expression of the 3C-like protease in Escherichia coli
JOURNAL Virology 278 (2), 490-500 (2000)
PUBMED 11118371
REFERENCE 2 (bases 1 to 7697)
AUTHORS Someya,Y., Takeda,N. and Miyamura,T.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2000) Yuichi Someya, National Institute of
Infectious Diseases, Department of Virology II; Toyama 1-23-1,
Shinjuku, Tokyo 162-8640, Japan (E-mail:someya@nih.go.jp,
Tel:81-3-5285-1111(ex.2523), Fax:81-3-5285-1161)
FEATURES Location/Qualifiers
source 1..7697
/organism="Chiba virus"
/mol_type="genomic RNA"
/strain="Hu/NLV/Chiba 407/1987/JP"
/db_xref="taxon:99565"
gene 5..5362
/gene="ORF1"
CDS 5..5362
/gene="ORF1"
/function="nonstructural"
/note="A polyprotein includes RNA helicase, VPg, protease,
and RNA polymerase"
/codon_start=1
/product="polyprotein"
/protein_id="BAB18266.1"
/translation="MMMASKDVVAATAASAENTSDNSDSIKNRFFTRLKNLGSNNKPI
KIENTHMALNLISRGSSPVPQDKPPKDQRDKPPRNVAETQQAMGWIDPPVDQNLPTWE
ELSQTEKQEILKNNSNWFDAGGLAPASIPSGYVKNTEQQPPDHQVKWSANNGVDLGVD
SLTTVPGPAWNLCPMPPIDQRNNGPAREPLIGDMIEFYEGHIYHYAIYIGQGKTVGVH
SPQAAFSIARITIHPIAAWWRVCYIPTPDQRLNYDQLKELENEPWPYAAVTNNCYEFC
CRILNLQDTWLERRLVTSGRFNHPAQDWSRDTPDFQQDSKLEIVRDAVLAAINGLVSK
PFKDLLNKLKPLNVLNLLSNCDWTFMGVVETIILLMELFGIFWNPPDVSSFIASLLPD
MHLQGPEDLAKDLIPLVLGGVGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFA
VLKKYFFGGDQTEKTLKDIETAVIDMEVISTTAVTQLVRDKQAARTYMNILDAEEEKA
RKLSVRHADPHVVSTTNALISRISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTK
AAEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQA
IADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTA
PDVEQTRRTNPGDTGALKDCFKSDFSHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNR
LLIQAVALTMERQDEFQMQGQVYDFDADRVSAFTSLARANGLGLISMASLGKKLRGVD
SVHGLKNALSGYTITPCSIKWQARVYDIESDGTNVQIKENTSAQTQRQQSIDTAALAL
TRLKAARAAAYAACIQGAITTILQMAGSAIVINRAVKRMFGAHSSTIALEGPPREHRC
RAHLAKAAGGGPIGHDDVIDKYGLCETEEEGTSEEMNVELPTATSEGKNKGKTKKGRG
RRANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGG
IGETEMEIRHKIFYKSKKGRQNERRQLGLVTGSDIRKRKPIDWTPPKNDWADDNREVD
YNEKLSFEAPPTLWSRVVRFGSGWGFWVSPTVFITTTHVIPTGVREFFGEPIESIAIH
RAGEFTQFRFSRKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMK
IQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNT
VVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPA
YLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPT
PWSFSDACQSLDKTTSSGHPYHKRKNDDWNGTSFVGELGEQAAHANNMFELGKSMKPL
YTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKPHVIKLPIKVG
MNSIEDGPMIYAEHAKYKNHFDADYSAWDSTQNRQIMTESFAIMCRLTASPELASVVA
KDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQS
QSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLR
RTISKDAAGFQGRLDRGSIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLH
GEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG
V"
gene 5346..6980
/gene="ORF2"
CDS 5346..6980
/gene="ORF2"
/function="structural"
/note="ORF2 encodes a capsid protein which makes
nucleocapsid."
/codon_start=1
/product="capsid protein"
/protein_id="BAB18267.1"
/translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA
TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV
PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL
FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ
PLGTTPVSVSQLCKFRGRITSGQRVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE
MSKIPNSSTQNNPIVTNSVKPNSQQFVPHLSSITLDENVSSGGDYIGTIQWTSPPSDS
GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL
LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ
LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR"
gene 6980..7606
/gene="ORF3"
CDS 6980..7606
/gene="ORF3"
/function="unknown"
/note="ORF3 encodes a protein rich in basic amino acids,
whose function is unknown"
/codon_start=1
/product="basic protein"
/protein_id="BAB18268.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN
SFNHDKEMLGYQMEMSNKLLAKNLNTRYSLLQAGGLSSSDAARAVAGAPVTRLVDWGG
VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPVQRTASWVQSQNSS
RSWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcagctact gctgctagtg ctgaaaacac
61 tagtgacaat agtgattcta taaagaaccg cttcttcaca agattgaaga atttaggttc
121 taacaataaa cctataaaaa ttgagaacac ccacatggcc ctcaacttaa ttagtagggg
181 gtcatctcca gttccacaag ataagccccc taaagatcag cgggacaaac ccccaaggaa
241 tgtggccgaa actcaacaag caatgggatg gattgacccc cccgtggatc agaatctacc
301 aacctgggag gaattgagcc aaacagagaa acaagagata ctcaaaaaca actcaaattg
361 gttcgatgct ggtggattgg caccagctag catcccttcc ggttatgtga agaacacaga
421 gcagcaaccc cctgaccacc aagtcaagtg gagtgccaat aacggggttg atctgggggt
481 ggacagttta accactgtgc caggcccagc atggaatcta tgccccatgc caccaattga
541 tcagcgtaac aatggtccag caagagagcc acttattggt gacatgatag agttctatga
601 gggtcacatc taccattatg caatatatat tggccaagga aaaactgttg gggtccactc
661 acctcaagcg gccttttcaa tagccagaat aactatacac cccattgctg cttggtggag
721 ggtttgttac ataccaacgc ctgatcagag gttaaactat gaccaactca aagagcttga
781 gaatgagcca tggccatatg ctgcagtcac caataactgc tatgagttct gctgcaggat
841 tcttaacctg caggatactt ggttagaacg ccgtttggtc acatctggtc gttttaacca
901 cccagcacaa gactggtcca gggacacacc tgacttccaa caagatagca aactagaaat
961 agttagggac gccgtgcttg ctgctatcaa tggcctggtg tcaaagccct ttaaagatct
1021 cctaaataaa cttaagccac tcaacgtgct caacctactc tccaattgtg attggacatt
1081 tatgggagtg gtggagacga taatattact catggaattg tttgggattt tctggaaccc
1141 ccctgatgtg tccagcttta tagcctcact actacctgac atgcacttgc aaggaccaga
1201 agatctggct aaagacttaa taccattggt gttggggggt gtagggcttg caattggatt
1261 tactaaggac aaagtcacaa aggttatgaa aagtgctgtt gaagggctga gggcagccac
1321 acaactgggt caatatggcc tagaaatatt tgcagtttta aagaaatatt tctttggtgg
1381 agatcaaaca gagaagactt taaaggatat tgaaacagcc gtgatcgaca tggaggtcat
1441 ctcaacaact gctgtcacgc aactggttag ggacaaacag gctgcccgaa cttacatgaa
1501 catcttggat gccgaagaag aaaaggcaag aaagctttca gttagacatg cagaccccca
1561 tgtcgtgtcc acgactaatg ctttgatctc acgtatttca ctggctcgct ccgcacttgc
1621 taaagcacaa gctgagatga ccaatagggt taaaccagta gtaataatga tgtgtggtcc
1681 cccaggcata ggcaagacaa aggcagctga gtaccttgct aagagattgg ccaatgagat
1741 acggcctgga ggaaaagttg gcctcgtgcc acgagaggct gtggatcatt gggatggata
1801 tcatggtgaa gaggttatgc tatgggatga ttatggtatg tcaaagatag ccgatgactg
1861 taataagttg caggccatag ccgacacagc cccactcacc ttgaattgtg atcggattga
1921 gaagaaagga ttacagttcg tctctgatgc catagtgata acaacaaatg ccccaggccc
1981 agctccagtc gactttgtca atcttggccc agtgtgtcgg cgggtagatt tcttggttta
2041 ctgcaccgcg cccgatgttg aacaaacacg tcgcactaac cctggagaca ctggagccct
2101 taaggattgt ttcaaaagtg acttctctca tctaaaaatg gagttagccc cacagggcgg
2161 atttgataat caaggaaata ctccatttgg taaagggacc atgcggccca ccacattaaa
2221 ccgtctcctc atacaggctg tggcactaac catggagcgc caggatgagt tccagatgca
2281 aggccaagtg tatgattttg atgctgacag ggtttccgcc tttactagtt tagcaagagc
2341 caatggtctg ggcctcatta gcatggcctc tctaggaaag aaattgaggg gcgtggactc
2401 ggttcatggc ctcaagaatg cattatcagg ctataccata accccttgta gtataaaatg
2461 gcaggctaga gtgtatgaca ttgaatcaga tggtactaat gtacaaataa aggaaaacac
2521 ctcagcccaa actcaacgcc agcagtcaat tgacacagct gccctagcac tcactaggct
2581 taaagcagca cgggcagcag cgtatgcagc ttgcatacaa ggcgcaataa caactatcct
2641 gcagatggct ggatcggcca tcgttataaa tcgtgctgtg aaaaggatgt ttggggcaca
2701 ctcaagcacc atagcccttg aagggccgcc aagagaacat cggtgtaggg ctcatttggc
2761 caaggctgca ggtggtggac caataggcca tgatgatgtc atcgataagt atggcctatg
2821 tgagactgag gaggaaggca ccagcgagga gatgaatgtg gagcttccca ccgccacttc
2881 tgagggtaaa aacaaaggaa agaccaagaa aggaaggggc agaagagcca actacaatgc
2941 tttttcaagg cggggtctga gcgatgaaga atacgaggag tacaagaaga tcagggaaga
3001 aaagaatggt aattacagta tccaggagta tcttgaagac agacaacgct atgaagaaga
3061 gctcgcagaa gtgcaagctg gtggagatgg aggcattggt gagacagaaa tggagattcg
3121 acacaagatc ttctataaat ccaaaaaggg tcgccaaaat gagcgccgcc aattaggact
3181 agtcactggc agtgacatca gaaagagaaa accaattgat tggacccccc ccaaaaatga
3241 ttgggcagat gataataggg aagtggatta caatgaaaaa ctcagttttg aagccccacc
3301 aaccctctgg agtcgagtcg tgagatttgg ctctgggtgg ggcttttggg tgagcccgac
3361 tgtttttatc accaccaccc atgttatacc aactggggtg cgtgaattct ttggggagcc
3421 cattgaatct atagcaatcc atcgtgctgg tgaatttaca caattcaggt tttcacgcaa
3481 agtccgcccg gatctgactg gaatggtgtt ggaggaaggc tgtcctgagg gtgtcgtgtg
3541 ttctattctt atcaagcgtg actctggtga gctgctaccc cttgctgtcc gaatgggcgc
3601 tatagcgtcc atgaagatcc agggaaggct agtgcatggt caatctggga tgctgctcac
3661 tggggctaac gctaagggga tggatttagg taccctacca ggtgattgtg gtgcccctta
3721 tgtgtacaaa agaaacaatg actgggtggt ttgtggtgta catgcagctg ccacgaagtc
3781 aggtaacact gtagtatgtg ctgttcaggc tggggaaggt gaaaccaccc tagagggtgg
3841 tgataaaggc cactatgctg gccatgagat aatcaagcat agcaagggcc cagctttatc
3901 aaccaaaacc aagttttgga gatcaacccc tgagccatta ccaccaggtg tttatgaacc
3961 agcatacctt gggggtcgtg acccaagggt aaaaggtgga ccttccctac aacaagtcct
4021 gcgtgatcag ttgaaaccat ttgccgagcc acgaggccgg atgccagagc ctggtttact
4081 tgaggcagcc gttgaaactg tcacatccat gcttgaacaa acaatggata caccaacccc
4141 ctggtctttc tctgatgcat gtcaatcact tgacaagacc acaagttcgg gacacccata
4201 ccataaaagg aaaaatgatg attggaatgg aacttcattt gttggggagc ttggagaaca
4261 ggcggcacat gccaacaaca tgtttgaatt gggcaagtct atgaagccac tttacaccgc
4321 ggccctaaag gatgaattag tcaagcctga gaaagtttat caaaagatta agaagaggct
4381 tctctggggt gctgatctct caacagttat aagggctgct agagcctttg gaccattttg
4441 tgatgctata aagccccatg tcattaaact ccctattaaa gttggtatga actccataga
4501 agatggtcca atgatttatg cagaacatgc aaagtataag aatcattttg atgcagatta
4561 ctcggcctgg gattccacac aaaatagaca gatcatgact gagtcctttg caatcatgtg
4621 ccgccttacg gcatcaccag aattggcctc tgttgtagcc aaagatctac ttgcgccttc
4681 agagatggat gttggggact acatcatccg tgtaaaagaa ggtttgccat caggatttcc
4741 ttgcacttca caggtgaaca gtataaacca ttggctaatc acattgtgtg ctatgtctga
4801 agtcacaggc ctgtcacctg atgtcataca atctcagtct tacttttctt tctatggtga
4861 tgatgagata gtctcaacag atattgattt tgaccccgcc cgcctcactc aagtgcttaa
4921 ggaatatgga ttgagaccca cccggccaga caaatcagaa ggacccatta tacttagaag
4981 acaggtagat ggtctcgttt tcttaaggag gacaatctca aaagatgctg caggctttca
5041 gggaaggcta gatagaggct caatagaaag gcagctctgg tggactcgag gccctaacca
5101 tgatgatcct agtgagactt taatcccaca ccctcagagg aaagttcagc ttatatccct
5161 ccttggcgag gcttcccttc atggtgagaa gttttatagg aaaatctcca gtaaagtcat
5221 acaggagata aagactggtg gtttggaaat gtatgtgcca ggctggcagg ctatgttccg
5281 ctggatgcgc ttccatgatc tcggattgtg gacaggagat cgcaatctct tgcccgaatt
5341 cgtaaatgat gatggcgtct aaggacgcta caccaagcgc agatggcgcc actggcgccg
5401 gccagctggt accggaggtt aatacagctg accccatacc tattgaccct gtggctggct
5461 cctctacagc ccttgccaca gcaggccagg ttaatttgat tgatccctgg ataatcaata
5521 attttgtgca agccccccag ggcgagttca caatatcccc aaataatacc cccggtgatg
5581 tgctttttga tttgcaatta ggaccccatt taaatccttt cctttcccac ctttctcaga
5641 tgtataatgg ttgggtgggc aacatgcgag tgcgtgttgt cttggctggt aatgctttca
5701 cggctgggaa ggttataatt tgttgtgtcc cccctggttt ccaatctcgc accctttcta
5761 tagcccaggc tactttattt ccccatgtta ttgctgatgt taggaccctt gaccctgtag
5821 aagtgcccct tgaagatgtt aggaatgtgt tgtatcataa taatgacacc caacccacca
5881 tgcgcctcct ttgcatgttg tacactcctc tccgcaccgg gggagcgtct ggtgggactg
5941 attcttttgt ggtggctggg cgtgtactca cttgtccggg ccctgacttt aacttcttat
6001 tcctagtccc tcccacagtc gagcaaaaga cccgcccttt tactgtgcct aatatccctt
6061 tgaagtacct gtctaattcc aggatcccaa atcctattga aggtatgtca ttgtcacctg
6121 accagaccca aaatgttcaa ttccagaatg gtaggtgtac aattgacggt caaccccttg
6181 ggaccacacc tgtctcagtt agtcagttat gtaagtttag gggtaggatt acatctggac
6241 agagagtgct caacttgaca gagttggatg gttcaccttt tatggccttt gccgcccccg
6301 cccctgcggg ctttccagat cttgggtcct gtgattggca tattgaaatg agtaaaatcc
6361 caaattccag cacccagaac aacccaatag tgaccaattc tgtcaaaccc aatagtcaac
6421 agtttgtccc acacttgtca agtatcaccc ttgatgaaaa tgtttccagt ggaggtgact
6481 atattggcac tatacaatgg acctcacctc cttctgattc tggcggggcc aatacaaatt
6541 tttggaaaat ccctgactat gggtccagcc tagcagaagc ttcacaactg gcccccgctg
6601 tctatccacc tggtttcaat gaggtgattg tgtattttat ggcatctata cctggtccca
6661 atcagtctgg gtctcctaat ttagtgccat gcctgctccc ccaggaatat ataacacact
6721 ttattagtga gcaggccccc atccagggtg aggctgcctt actccactat gtagacccag
6781 acaccaatcg caatttgggt gagttcaaat tatatcctgg tggttattta acctgtgttc
6841 ctaatagttc tagtactgga cctcaacaac ttcctcttga tggtgtattt gtctttgctt
6901 cttgggtttc tagattttat caattaaagc ctgtgggaac agccggaccg gctagaggta
6961 ggcttggtgt ccgtagataa tggcccaagc cattatagga gccattgccg cctccgcagc
7021 cggtagcgcc cttggtgctg gcatccaggc tggtgctgaa gctgcgttgc aggcacagag
7081 atatcaacaa gatctgactt tgcagcaaaa ttcttttaat catgataagg aaatgttagg
7141 ttatcaaatg gaaatgtcca acaagttgct agctaaaaat cttaacaccc gctattctct
7201 tctccaggcg ggtggcctct catcctctga tgcggctagg gctgtagccg gggcccccgt
7261 cactaggttg gtcgactggg ggggagtgcg tgttgcggca ccccaatcat ctgccaccac
7321 attgagatct ggtaatttta tggctgtgcc actcccagct cagccaaaac agaagcccct
7381 tgccagtgaa ggttattcta accctgctta tgaccctgtg caacgcacag cctcttgggt
7441 tcaatctcag aactccagcc ggtcttggtc tccataccat aggcaagccc ttcagactgt
7501 gtgggtgacc ccccctggtt ctacctcttc ttcttctgtt tctactgccc ctcgagggta
7561 tttcaataca gatagattgc ctctattcgc aaacttgagg cgttaatgtt gtaataagat
7621 tagtgagcat cctattcaat ttttggcttt atataatttg gttataattg gcttttaatt
7681 ttgatttggt tgatgtt
//